Seminarium do wykładu:

Zastosowanie modelowania molekularnego w biologii (BT152)

Lista artykułów do wyboru w roku akademickim 2009/2010:

  1. The long coming of computational structural biology. A. N. Lupas. Journal of Structural Biology. 163, 254-257, 2008.

  2. High-throuhgput X-ray crystallography for drug discovery. T. L. Blundell and S. Patel. Curr. Opin. Pharmacology, 4, 490-496, 2004.


  1. Antimicrobial peptides of multicellular organisms. Michael Zasloff. Nature. 415, 389-395, 2002.

  2. How do bacteria resist human antimicrobial peptides? A. Peschel. Trends i Microbiology. 10, 179-186, 2002.


  1. Lateral proton diffusion (Letter). J. Teissié. Nature. 379, 305-306, 1996. (5-6 referuje jedna osoba)

  2. The Grotthuss mechanism. N. Agmon. Chemical Physics Letters. 244, 456-462, 1995. (5-6 referuje jedna osoba)

  3. Structural proton diffusion along lipid bilayers. S. Serowy, S. M. Saparov, Y. N. Antonenko, W. Kozlovsky, V. Hagen and P. Pohl. Biophys J. 84, 1031-1037, 2003.


  1. Water structure and interactions with protein surfaces. T. M. Raschke. Curr. Opin. Struct. Biol. 16, 152-159, 2006.

  2. Water–protein interactions from high-resolution protein crystallography. M. Nakasako. Phil. Trans. R. Soc. London. B. 359, 1191-1206, 2004.


  1. Crystal structure of rhodopsin: a template for cone visual pigments and other G protein-coupled receptors. R. E. Stenkamp, S. Filipek, C. A. Driessen, D. C. Teller, K. Palczewski. Biochim. Biophys. Acta/Biomembranes. 1563, 168-182, 2002.

  2. Structure and function of water channels. Y. Fujiyoshi, K. Mitsuoka, L. B. de Groot, A. Philippsen, et. al. Curr. Opin. Struct. Biol. 12, 509-515, 2002.


  1. Formation of functional cell membrane domains: the interplay of lipid- and protein-mediated interactions. T. Harder. Phil. Trans. R. Soc. Lond. B. 358 (1433), 863-868, 2003.

  2. Single-molecule biology: What is it and how does it work? J. Zlatanova, K. van Holde. Molecular Cell. 24, 317-329, 2006.

  3. Structural biology by NMR: structure, dynamics, and interactions. P. R. L. Markwick, T. Malliavin, M. PLoS Computational Biology. 4, e1000168, 1-7, 2008.

  4. Molecular dynamics simulation of water in cytochrome c oxidase reveals two water exit pathways and the mechanism of transport. R. Sugitani, A. A. Stuchebrukhov. BBA Bioenergetics 1787,1140–1150, 2009.

  5. Binding of small-molecule ligands to proteins: ”What you see” is not always “What you get” D. L. Mobley, K. A. Dill. Structure-Review. 17, 489-498, 2009.

  6. Insights from biophysical studies on the role of polyunsaturated fatty acids for function of G-protein coupled membrane receptors. K. Gawrisch, O. Soubias, M. Mihailescu. Prostaglandins, Leukotrienes and Essential Fatty Acids 79, 131–134, 2008.

  7. NMR - this other method for protein and nucleic acid structure determination. K. Wüthrich. Acta. Cryst. D51, 249-270, 1995.

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