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 1. M. Zdzalik, M. Kalinska, M. Wysocka, J. Stec-Niemczyk, P. Cichon, N. Stach, N. Gruba, H. R. Stennicke, A. Jabaiah, M. Markiewicz, S. Kedracka-Krok, B. Wladyka, P. S. Daugherty, A. Lesner, K. Rolka, A. Dubin, J. Potempa, G. Dubin, Biochemical and structural characterization of SplD protease from Staphylococcus aureus, PLOS-One, 2013 (accepted).
 1. P. Kolesinski, P. Golik, P. Grudnik, J. Piechota, M. Markiewicz, M. Tarnawski, G. Dubin, A. Szczepaniak, Insights into eukaryotic Rubisco assembly — Crystal structures of RbcX chaperones from Arabidopsis thaliana. BBA - General Subjects, 1830(4), 2899–2906, 2013. [[attachment:2013_BBA.pdf|PDF]]
 1. M. Banas, K. Zabieglo, G. Kasetty, M. Kapinska-Mrowiecka, J. Borowczyk, J. Drukala, K. Murzyn, B. A. Zabel, E. C. Butcher, J. M. Schroeder, A. Schmidtchen, J. Cichy. Chemerin Is an Antimicrobial Agent in Human Epidermis. PLOS ONE, 8, 2013. [[attachment:journal.pone.0058709.pdf|PDF]]
 1. E. Plesnar, W. K. Subczynski, M. Pasenkiewicz-Gierula. Comparative Computer Simulation Study of Cholesterol in Hydrated Unary and Binary Lipid Bilayers and in an Anhydrous Crystal. The Journal of Physical Chemistry B, 8758−8769, 117, 2013. [[attachment:comparative_computer_simulation_study.pdf|PDF]]
 1. M. Pasenkiewicz-Gierula, M. Markiewicz. Computer Modelling of the Lipid Matrix of Biomembranes. Computational methods to study the structure and dynamics of biomolecules and biomolecular processes – from bioinformatics to molecular quantum mechanics. Ed. A. Liwo, Springer Verlag, Berlin, Heidelberg, 317-356. [[attachment:chapter.pdf|PDF]]

Publication List 2009-2012

  1. A. Orłowski, M. Grzybek, A. Bunker, M. Pasenkiewicz-Gierula, I. Vattulainen, P.T. Mannisto, T. Róg. Strong preferences of dopamine and L-dopa towards lipid head group: importance of lipid composition and implication for neurotransmitter metabolism. Journal of Neurochemistry, 122, 681-690, 2012. PDF

  2. M. Pasenkiewicz-Gierula, K. Baczyński, K. Murzyn, M. Markiewicz. Orientation of lutein in a lipid bilayer — revisited. Acta Biochimica Polonica, 59, 105-108, 2012. PDF

  3. E. Plesnar, W. K. Subczynski, M. Pasenkiewicz-Gierula. Saturation with cholesterol increases vertical order and smoothes the surface of the phosphatidylcholine bilayer: A molecular simulation study. Biochimica et Biophysica Acta, 1818, 520–529, 2012. PDF

  4. G.R. Kneller, K. Baczynski, M. Pasenkiewicz-Gierula. Communication: Consistent picture of lateral subdiffusion in lipid bilayers: Molecular dynamics simulation and exact results. J. Chem. Phys. 135, 141105, 2011. PDF

  5. A. Orłowski, J.F. St-Pierre, A. Magarkar, A. Bunker, M. Pasenkiewicz-Gierula, I. Vattulainen, T. Róg. Properties of the Membrane Binding Component of Catechol-O-methyltransferase Revealed by Atomistic Molecular Dynamics Simulations. J. Phys. Chem. B 115, 13541–13550, 2011. PDF

  6. M.M. Klimecka, M. Chruszcz, J. Font, T. Skarina, I. Shumilin, O. Onopryienko, P.J. Porebski, M. Cymborowski, M.D. Zimmerman, J. Hasseman, I.J. Glomski, L. Lebioda, A. Savchenko, A. Edwards, W. Minor. Structural Analysis of a Putative Aminoglycoside N-Acetyltransferase from Bacillus anthracis. J. Mol. Biol. 410, 411–423, 2011. PDF

  7. M. Markiewicz, M. Pasenkiewicz-Gierula. Comparative Model Studies of Gastric Toxicity of Nonsteroidal Anti-Inflammatory Drugs. Langmuir, 27, 6950–6961, 2011. PDF

  8. M. Stepniewski, M. Pasenkiewicz-Gierula, T. Róg, R. Danne, A. Orlowski, M. Karttunen, A. Urtti, M. Yliperttula, E. Vuorimaa, A. Bunker. Study of PEGylated Lipid Layers as a Model for PEGylated Liposome Surfaces: Molecular Dynamics Simulation and Langmuir Monolayer Studies. Langmuir 27, 7788–7798, 2011. PDF

  9. G. Neunert, P. Polewski, M. Markiewicz et al. Partition of tocopheryl glucopyranoside into liposome membranes studied by fluorescence methods. Biophys. Chem., 146, 92-97, 2010. PDF

  10. M. Stępniewski, A. Bunker, M. Pasenkiewicz-Gierula, M. Karttunen, T. Róg. Effects of the lipid bilayer phase state on the water membrane interface. J. Phys. Chem. B., 114, 11784-11792, 2010. PDF

  11. T. Róg, M. Pasenkiewicz-Gierula, I. Vattulainen, and M. Karttunen. Ordering effects of cholesterol and its analogues. Biochim. Biophys. Acta Biomembranes. 1788, 97-121, 2009. PDF

  12. T Róg, K. Murzyn, J. Milhaud, M. Karttunen, and M. Pasenkiewicz-Gierula. Water isotope effect on the bilayer properties: a molecular dynamics simulation study. J. Phys. Chem. B. 113, 2378-2387, 2009. PDF

  13. P. Górnas, G. Neunert, K. Baczyński, K. Polewski. Beta-cyclodextrin complexes with chlorogenic and caffeic acids from coffee brew: Spectroscopic, thermodynamic and molecular modelling study. Food Chemistry. 114, 190-196, 2009. PDF

  14. G. Neunert, P. Polewski, M. Markiewicz, P. Walejko, S. Witkowski, K. Polewski. Glycosidic moiety changes spectroscopic properties of DL-á-tocopherol in DMSO/water solution and in organic solvents. Spectrochim. Acta A: Molecular and Biomolecular Spectroscopy, 73, 301-308, 2009. PDF

ModMol: Publications_2009-2012 (last edited 2016-04-25 12:17:03 by AgnieszkaKruszyna)